Lfile = connect(filename = 'SCG71.loom', mode = 'r+')Īttributes: creation_date, chunks, velocyto._version_, velocyto.logic, version 'SCG71:AAACAAACAGCAGAAC' 'SCG71:AAACAAACTTTGGGAG'Īfter that, I don't know what to do with that but I think your issue of importing a datafile is because you don't have the right package to open it.Īlternatively, you can also install the package loomR and then enter: library(loomR) 'SCG71:AAACGATCCTACTTGT' 'SCG71:AAACACTACGTAGAAG' 'SCG71:AAACACGGCATCGCAG'

You can then load some data > scle$CellID Metadata(4): chunks creation_date velocyto._version_ velocyto.logicĪssays(4): matrix ambiguous spliced unspliced On my computer, once I get it install, I was able to load your SCG71.loom file using: library(LoomExperiment) On bioconductor, you can also find LoomExperiment. $ ambiguous:Formal class 'dgCMatrix' with 6 slots $ unspliced:Formal class 'dgCMatrix' with 6 slots $ : chr 'SCG71:AAACGATCCTACTTGT' 'SCG71:AAACACTACGTAGAAG' 'SCG71:AAACACGGCATCGCAG' 'SCG71:AAACAAACAGCAGAAC'. $ spliced :Formal class 'dgCMatrix' with 6 slots

loom file but on the velocyto.R tutorial, it is specified to do the following: library(velocyto.R) I'm not very familiar with this kind of of. loom file that can be open using the velocyto.R package. The file that you are trying to import is not a velocyto file but a. I'm not sure that your issues is from RStudio cloud but more about how you are trying to open the file.

Rstudio on cloud